Mercurial > repos > bonsai > sortmerna
diff tool-data/rRNA_databases.loc.sample @ 0:2e7f0da431e3 draft default tip
Uploaded version 1.0
| author | bonsai |
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| date | Tue, 30 Apr 2013 13:12:35 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool-data/rRNA_databases.loc.sample Tue Apr 30 13:12:35 2013 -0400 @@ -0,0 +1,26 @@ +#This is a sample file distributed with Galaxy that is used to define a +#list of public ribosomal databases, using three columns tab separated +#(longer whitespace are TAB characters): +# +#<unique_id> <database_caption> <base_name_path> +# +#It is important that the actual database name does not have a space in it, +#and that the first tab that appears in the line is right before the path. +# +#So, for example, if your database is rfam-5.8s and the path to your base name +#is /data/rRNA_databases/rfam-5.8s, then the rRNA_databases.loc entry would look like this: +# +#rfam-5.8s Rfam 5.8S eukarya /data/rRNA_databases/rfam-5.8s +# +#Since SortMeRNA comes bundled with eight ribosomal databases, which are ready +#for use after the tool installation, this sample file is in fact an actual file +#to save the user the trouble of setting it. +# +rfam-5.8s Rfam 5.8S eukarya $SORTMERNADIR/rRNA_databases/rfam-5.8s-database-id98.fasta +rfam-5s Rfam 5S archaea/bacteria $SORTMERNADIR/rRNA_databases/rfam-5s-database-id98.fasta +silva-arc-16s SILVA 16S archaea $SORTMERNADIR/rRNA_databases/silva-arc-16s-database-id95.fasta +silva-arc-23s SILVA 16S bacteria $SORTMERNADIR/rRNA_databases/silva-arc-23s-database-id98.fasta +silva-bac-16s SILVA 16S bacteria $SORTMERNADIR/rRNA_databases/silva-bac-16s-database-id85.fasta +silva-bac-23s SILVA 23S bacteria $SORTMERNADIR/rRNA_databases/silva-bac-23s-database-id98.fasta +silva-euk-18s SILVA 18S eukarya $SORTMERNADIR/rRNA_databases/silva-euk-18s-database-id95.fasta +silva-euk-28s SILVA 28S eukarya $SORTMERNADIR/rRNA_databases/silva-euk-28s-database-id98.fasta