annotate tool_dependencies.xml @ 1:eca882dd6393 draft

Uploaded updated xml

<?xml version="1.0"?>
<tool_dependency>
    <package name="readline" version="6.2">
        <repository changeset_revision="ff20613e6fee" name="package_readline_6_2" owner="boris" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" />
    </package>
    <package name="libpng" version="1.6.7">
        <repository changeset_revision="7de5acbf6c85" name="package_libpng_1_6_7" owner="boris" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" />
    </package>
    <package name="cairo" version="1.12.14">
        <repository changeset_revision="0e7e9b619f24" name="package_cairo_1_12_14" owner="boris" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" />
    </package>
    <package name="pixman" version="0.32.4">
        <repository changeset_revision="32b797e460d8" name="package_pixman_0_32_4" owner="boris" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" />
    </package>
    <package name="freetype" version="2.5.2">
        <repository changeset_revision="261854cf7ae9" name="package_freetype_2_5_2" owner="boris" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" />
    </package>
    <package name="R" version="2.15.0">
        <install version="1.0">
            <actions>
                <action type="download_by_url">http://cran.rstudio.com/src/base/R-2/R-2.15.0.tar.gz</action>
                <action type="set_environment_for_install">
                    <repository changeset_revision="ff20613e6fee" name="package_readline_6_2" owner="boris" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu">
                        <package name="readline" version="6.2" />
                    </repository>
                    <repository changeset_revision="7de5acbf6c85" name="package_libpng_1_6_7" owner="boris" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu">
                        <package name="libpng" version="1.6.7" />
                    </repository>
                    <repository changeset_revision="0e7e9b619f24" name="package_cairo_1_12_14" owner="boris" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu">
                        <package name="cairo" version="1.12.14" />
                    </repository>
                    <repository changeset_revision="32b797e460d8" name="package_pixman_0_32_4" owner="boris" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu">
                        <package name="pixman" version="0.32.4" />
                    </repository>
                    <repository changeset_revision="261854cf7ae9" name="package_freetype_2_5_2" owner="boris" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu">
                        <package name="freetype" version="2.5.2" />
                    </repository>
                </action>
                <action type="shell_command">
                    export LDFLAGS="-L$PNG_LIBS -L$READLINE_LIBS" &amp;&amp; \
                    export CFLAGS="-I$PNG_INCLUDES -I$READLINE_INCLUDES" &amp;&amp; \
                    export CXXFLAGS="-I$PNG_INCLUDES -I$READLINE_INCLUDES" &amp;&amp; \
                    export CPPFLAGS="-I$PNG_INCLUDES -I$READLINE_INCLUDES" &amp;&amp; \
                    ./configure --with-blas \
                                --with-lapack \
                                --with-readline \
                                --with-cairo \
                                --with-libpng \
                                --without-x \
                                --enable-R-shlib \
                                --disable-R-framework \
                                --prefix=$INSTALL_DIR 
                </action>
                <action type="make_install" />
                <action type="set_environment">
                    <environment_variable action="set_to" name="R_HOME">$INSTALL_DIR/lib/R</environment_variable>
                    <environment_variable action="set_to" name="R_LIBS">$INSTALL_DIR/lib/R/library</environment_variable>
                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/lib/R/bin</environment_variable>
                </action>
            </actions>
        </install>
        <readme>R is a free software environment for statistical computing and graphics
            WARNING: See custom compilation options above
        </readme>
    </package>
</tool_dependency>