Mercurial > repos > boris > package_rpy2_2_2
comparison tool_dependencies.xml @ 1:58279878f849 draft
Uploaded updated xml
| author | boris |
|---|---|
| date | Tue, 04 Feb 2014 12:36:05 -0500 |
| parents | 31bb8a2b748e |
| children | 7066d625eb36 |
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| 0:31bb8a2b748e | 1:58279878f849 |
|---|---|
| 4 <repository changeset_revision="ff20613e6fee" name="package_readline_6_2" owner="boris" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" /> | 4 <repository changeset_revision="ff20613e6fee" name="package_readline_6_2" owner="boris" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" /> |
| 5 </package> | 5 </package> |
| 6 <package name="ape" version="3.0-8"> | 6 <package name="ape" version="3.0-8"> |
| 7 <repository changeset_revision="423395d792df" name="package_ape_3_0" owner="boris" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" /> | 7 <repository changeset_revision="423395d792df" name="package_ape_3_0" owner="boris" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" /> |
| 8 </package> | 8 </package> |
| 9 <package name="R" version="2.15.0"> | |
| 10 <repository changeset_revision="eca882dd6393" name="package_r_2_15_0" owner="boris" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" /> | |
| 11 </package> | |
| 9 <package name="rpy2" version="2.2.6"> | 12 <package name="rpy2" version="2.2.6"> |
| 10 <install version="1.0"> | 13 <install version="1.0"> |
| 11 <actions> | 14 <actions> |
| 12 <action type="download_by_url">https://pypi.python.org/packages/source/r/rpy2/rpy2-2.2.6.tar.gz</action> | 15 <action type="download_by_url">https://pypi.python.org/packages/source/r/rpy2/rpy2-2.2.6.tar.gz</action> |
| 13 <action type="set_environment_for_install"> | 16 <action type="set_environment_for_install"> |
| 14 <repository changeset_revision="ff20613e6fee" name="package_readline_6_2" owner="boris" toolshed="http://testtoolshed.g2.bx.psu.edu/"> | 17 <repository changeset_revision="ff20613e6fee" name="package_readline_6_2" owner="boris" toolshed="http://toolshed.g2.bx.psu.edu"> |
| 15 <package name="readline" version="6.2" /> | 18 <package name="readline" version="6.2" /> |
| 16 </repository> | 19 </repository> |
| 17 <repository changeset_revision="423395d792df" name="package_ape_3_0" owner="boris" toolshed="http://testtoolshed.g2.bx.psu.edu/"> | 20 <repository changeset_revision="423395d792df" name="package_ape_3_0" owner="boris" toolshed="http://toolshed.g2.bx.psu.edu"> |
| 18 <package name="ape" version="3.0-8" /> | 21 <package name="ape" version="3.0-8" /> |
| 22 </repository> | |
| 23 <repository changeset_revision="eca882dd6393" name="package_r_2_15_0" owner="boris" toolshed="http://toolshed.g2.bx.psu.edu"> | |
| 24 <package name="R" version="2.15.0" /> | |
| 19 </repository> | 25 </repository> |
| 20 </action> | 26 </action> |
| 21 <action type="make_directory">$INSTALL_DIR/lib/python</action> | 27 <action type="make_directory">$INSTALL_DIR/lib/python</action> |
| 22 <action type="shell_command">export R_HOME=$R_HOME && export R_LIBS=$R_LIBS && export PATH=$PATH &&export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &&python setup.py install --home $INSTALL_DIR --install-scripts $INSTALL_DIR/bin</action> | 28 <action type="shell_command"> |
| 29 export R_HOME=$R_HOME && \ | |
| 30 export R_LIBS=$R_LIBS && \ | |
| 31 export PATH=$PATH && \ | |
| 32 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python && \ | |
| 33 export CFLAGS="-I$READLINE_INCLUDES" && \ | |
| 34 export LDFLAGS="-L$READLINE_LIBS" && \ | |
| 35 python setup.py install --home $INSTALL_DIR --install-scripts $INSTALL_DIR/bin | |
| 36 </action> | |
| 23 <action type="set_environment"> | 37 <action type="set_environment"> |
| 24 <environment_variable action="prepend_to" name="R_HOME">$ENV[R_HOME]</environment_variable> | 38 <environment_variable action="prepend_to" name="R_HOME">$ENV[R_HOME]</environment_variable> |
| 25 <environment_variable action="prepend_to" name="R_LIBS">$ENV[R_LIBS]</environment_variable> | 39 <environment_variable action="prepend_to" name="R_LIBS">$ENV[R_LIBS]</environment_variable> |
| 26 <environment_variable action="prepend_to" name="PATH">$ENV[PATH]</environment_variable> | 40 <environment_variable action="prepend_to" name="PATH">$ENV[PATH]</environment_variable> |
| 27 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable> | 41 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable> |