Mercurial > repos > boris > package_rpy2_2_2
changeset 1:58279878f849 draft
Uploaded updated xml
author | boris |
---|---|
date | Tue, 04 Feb 2014 12:36:05 -0500 |
parents | 31bb8a2b748e |
children | 7066d625eb36 |
files | tool_dependencies.xml |
diffstat | 1 files changed, 17 insertions(+), 3 deletions(-) [+] |
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--- a/tool_dependencies.xml Mon Feb 03 12:59:12 2014 -0500 +++ b/tool_dependencies.xml Tue Feb 04 12:36:05 2014 -0500 @@ -6,20 +6,34 @@ <package name="ape" version="3.0-8"> <repository changeset_revision="423395d792df" name="package_ape_3_0" owner="boris" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" /> </package> + <package name="R" version="2.15.0"> + <repository changeset_revision="eca882dd6393" name="package_r_2_15_0" owner="boris" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" /> + </package> <package name="rpy2" version="2.2.6"> <install version="1.0"> <actions> <action type="download_by_url">https://pypi.python.org/packages/source/r/rpy2/rpy2-2.2.6.tar.gz</action> <action type="set_environment_for_install"> - <repository changeset_revision="ff20613e6fee" name="package_readline_6_2" owner="boris" toolshed="http://testtoolshed.g2.bx.psu.edu/"> + <repository changeset_revision="ff20613e6fee" name="package_readline_6_2" owner="boris" toolshed="http://toolshed.g2.bx.psu.edu"> <package name="readline" version="6.2" /> </repository> - <repository changeset_revision="423395d792df" name="package_ape_3_0" owner="boris" toolshed="http://testtoolshed.g2.bx.psu.edu/"> + <repository changeset_revision="423395d792df" name="package_ape_3_0" owner="boris" toolshed="http://toolshed.g2.bx.psu.edu"> <package name="ape" version="3.0-8" /> </repository> + <repository changeset_revision="eca882dd6393" name="package_r_2_15_0" owner="boris" toolshed="http://toolshed.g2.bx.psu.edu"> + <package name="R" version="2.15.0" /> + </repository> </action> <action type="make_directory">$INSTALL_DIR/lib/python</action> - <action type="shell_command">export R_HOME=$R_HOME && export R_LIBS=$R_LIBS && export PATH=$PATH &&export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &&python setup.py install --home $INSTALL_DIR --install-scripts $INSTALL_DIR/bin</action> + <action type="shell_command"> + export R_HOME=$R_HOME && \ + export R_LIBS=$R_LIBS && \ + export PATH=$PATH && \ + export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python && \ + export CFLAGS="-I$READLINE_INCLUDES" && \ + export LDFLAGS="-L$READLINE_LIBS" && \ + python setup.py install --home $INSTALL_DIR --install-scripts $INSTALL_DIR/bin + </action> <action type="set_environment"> <environment_variable action="prepend_to" name="R_HOME">$ENV[R_HOME]</environment_variable> <environment_variable action="prepend_to" name="R_LIBS">$ENV[R_LIBS]</environment_variable>