comparison dotplot_runner.xml @ 5:dc2aed283637 draft

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4:a0b4bcf67972

      <param name="input" value="fa_gc_content_input.fa"/>
      <output name="out_file1" file="fa_gc_content_output.txt"/>
    </test>
  </tests>
  <help>
  </help>
</tool>

5:dc2aed283637

      <param name="input" value="fa_gc_content_input.fa"/>
      <output name="out_file1" file="fa_gc_content_output.txt"/>
    </test>
  </tests>
  <help>
**Running ProHits DotPlot**

This runs the biclustering version of the DotPlot tool found at http://prohitstools.mshri.on.ca/. A more interactive version can be found at http://prohits-viz.lunenfeld.ca/. 

INPUTS:

Saint Output: SAINTexpress generated "list.txt" file.

Primary False Discovery Rate

Secondary False Discovery Rate

Maximum Spectral Count

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**Please cite** 

 * Knight, J.D., Liu, G., Zhang, J., Pasculescu, A., Choi, H., and Gingras, A.-C. (2014) A web-tool for visualizing quantitative protein-protein interaction data. Proteomics, in press. PMID:25422071. 

  </help>
</tool>