Mercurial > repos > bornea > filter_fasta
comparison filter_fasta.py @ 8:afcea0f23a55 draft
Uploaded
| author | bornea |
|---|---|
| date | Sat, 06 Aug 2016 17:12:36 -0400 |
| parents | e01b49c112b0 |
| children | 6794a638a504 |
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| 7:e01b49c112b0 | 8:afcea0f23a55 |
|---|---|
| 77 if temp != []: | 77 if temp != []: |
| 78 merged = "\n".join(temp) | 78 merged = "\n".join(temp) |
| 79 if merged!="": | 79 if merged!="": |
| 80 seq.append(merged) | 80 seq.append(merged) |
| 81 cnt=0 | 81 cnt=0 |
| 82 x = open("output.fasta","w"): | 82 x = open("output.fasta","w") |
| 83 for i in header: | 83 for i in header: |
| 84 x.write(i+'\n'+seq[cnt]+'\n') | 84 x.write(i+'\n'+seq[cnt]+'\n') |
| 85 cnt+=1 | 85 cnt+=1 |
| 86 x.close() | 86 x.close() |
| 87 fasta = sys.argv[1] # fasta file to filter | 87 fasta = sys.argv[1] # fasta file to filter |