# HG changeset patch
# User bornea
# Date 1470517823 14400
# Node ID e01b49c112b09a4811804284e7f24fdc0fe8ea9c
# Parent  5990c4dbfbaa2ab45bc7a111d7a9dc6164015333
Uploaded

diff -r 5990c4dbfbaa -r e01b49c112b0 filter_fasta.py
--- a/filter_fasta.py	Sat Aug 06 17:04:57 2016 -0400
+++ b/filter_fasta.py	Sat Aug 06 17:10:23 2016 -0400
@@ -79,10 +79,11 @@
                 if merged!="":
                     seq.append(merged)
     cnt=0
-    with open("output.fasta","w") as x:
-        for i in header:
-            x.write(i+'\n'+seq[cnt]+'\n')
-            cnt+=1
+    x = open("output.fasta","w"):
+    for i in header:
+        x.write(i+'\n'+seq[cnt]+'\n')
+        cnt+=1
+    x.close()
 fasta = sys.argv[1] # fasta file to filter
 data = sys.argv[2] # scaffold report #2 -- filename