Mercurial > repos > bornea > merge_scaffold
annotate MergeFilesWrapper.py @ 8:7f22e53d5028 draft
Uploaded
author | bornea |
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date | Wed, 03 Aug 2016 15:14:31 -0400 |
parents | 33a9aff96cb3 |
children | abe608eb4aa4 |
rev | line source |
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7 | 1 import sys |
2 import os | |
3 | |
4 infile1 = sys.argv[1] # scaffold report #1 -- filename | |
5 infile2 = sys.argv[2] # scaffold report #2 -- filename | |
6 infile3 = sys.argv[3] # scaffold report #3 -- filename or "False" | |
7 baitfile = sys.argv[4] # Bait file -- filename | |
8 outfile = sys.argv[5] # output filename | |
9 ins_path = sys.argv[6] | |
10 | |
11 cmd = r"python " + str(ins_path) + " " + str(infile1) + " " + str(infile2) + " " + str(infile3) + " " + str(baitfile) + " " str(outfile) |