Mercurial > repos > bornea > merge_scaffold
view MergeFiles.xml @ 5:b90313f7bbab draft
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author | bornea |
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date | Wed, 03 Aug 2016 14:55:17 -0400 |
parents | c1b96e4abf8d |
children | 7f22e53d5028 |
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<tool id="MergeScaffold" name="Merge Scaffold"> <description></description> <command interpreter="python">MergeFiles.py $input1 $input2 $input3 $baitfile $merged</command> <requirements> <requirement type="set_environment">INSTALL_RUN_PATH</requirement> <requirement type="package" version="0.14.1">package_pandas_0_14</requirement> </requirements> <inputs> <param format="txt" name="input1" type="data" label="Scaffold Output 1"/> <param format="txt" name="input2" type="data" label="Scaffold Output 2"/> <param format="txt" name="input3" type="data" label="Scaffold Output 3" optional = "true"/> <param format="txt" name="baitfile" type="data" label="baitfile"/> </inputs> <outputs> <data format="txt" name="merged" label="Merged Scaffold Report"/> </outputs> <stdio> <regex match="Error|error" source="stdout" level="fatal" description="Unknown error"/> <regex match="Error|error" source="stderr" level="fatal" description="Unknown error"/> <regex match="Error: bad bait" source="stdout" level="fatal" description="Error: bad bait"/> </stdio> <tests> <test> <param name="input" value="fa_gc_content_input.fa"/> <output name="out_file1" file="fa_gc_content_output.txt"/> </test> </tests> <help> This program will merge either 2 or 3 scaffold sample report files together. </help> </tool>