Mercurial > repos > bornea > merge_scaffold
changeset 7:33a9aff96cb3 draft
Uploaded
| author | bornea |
|---|---|
| date | Wed, 03 Aug 2016 15:14:17 -0400 |
| parents | 008bc143e72e |
| children | 7f22e53d5028 |
| files | MergeFilesWrapper.py |
| diffstat | 1 files changed, 11 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/MergeFilesWrapper.py Wed Aug 03 15:14:17 2016 -0400 @@ -0,0 +1,11 @@ +import sys +import os + +infile1 = sys.argv[1] # scaffold report #1 -- filename +infile2 = sys.argv[2] # scaffold report #2 -- filename +infile3 = sys.argv[3] # scaffold report #3 -- filename or "False" +baitfile = sys.argv[4] # Bait file -- filename +outfile = sys.argv[5] # output filename +ins_path = sys.argv[6] + +cmd = r"python " + str(ins_path) + " " + str(infile1) + " " + str(infile2) + " " + str(infile3) + " " + str(baitfile) + " " str(outfile)