Mercurial > repos > bornea > nsaf_scoring

comparison nsaf_scoring.py @ 4:9ff511e32040 draft

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author bornea
date Wed, 11 May 2016 10:53:40 -0400
parents 46a582eb1ea9
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3:a3a434885799 4:9ff511e32040
32 interfile = sys.argv[4] 32 interfile = sys.argv[4]
33 ins_path = sys.argv[6] 33 ins_path = sys.argv[6]
34 34
35 35
36 cmd = (r"Rscript "+ str(ins_path) + r"/nsaf_scoring.R " + str(listfile) + r" " 36 cmd = (r"Rscript "+ str(ins_path) + r"/nsaf_scoring.R " + str(listfile) + r" "
37 + str(preyfile) + r" " + str(crapfile) + r" " + str(inter_file)) 37 + str(preyfile) + r" " + str(crapfile) + r" " + str(interfile))
38 os.system(cmd) 38 os.system(cmd)
39 39
40 os.rename("SaintTable.txt", sys.argv[5]) 40 os.rename("SaintTable.txt", sys.argv[5])