Mercurial > repos > bornea > nsaf_scoring
comparison nsaf_scoring.py @ 4:9ff511e32040 draft
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author | bornea |
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date | Wed, 11 May 2016 10:53:40 -0400 |
parents | 46a582eb1ea9 |
children |
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3:a3a434885799 | 4:9ff511e32040 |
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32 interfile = sys.argv[4] | 32 interfile = sys.argv[4] |
33 ins_path = sys.argv[6] | 33 ins_path = sys.argv[6] |
34 | 34 |
35 | 35 |
36 cmd = (r"Rscript "+ str(ins_path) + r"/nsaf_scoring.R " + str(listfile) + r" " | 36 cmd = (r"Rscript "+ str(ins_path) + r"/nsaf_scoring.R " + str(listfile) + r" " |
37 + str(preyfile) + r" " + str(crapfile) + r" " + str(inter_file)) | 37 + str(preyfile) + r" " + str(crapfile) + r" " + str(interfile)) |
38 os.system(cmd) | 38 os.system(cmd) |
39 | 39 |
40 os.rename("SaintTable.txt", sys.argv[5]) | 40 os.rename("SaintTable.txt", sys.argv[5]) |