Mercurial > repos > bornea > plot_force
changeset 1:70c42d02d54e draft default tip
Uploaded
| author | bornea |
|---|---|
| date | Wed, 18 Oct 2017 15:34:23 -0400 |
| parents | 4324d3f925fe |
| children | |
| files | PlotForce.xml |
| diffstat | 1 files changed, 46 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/PlotForce.xml Wed Oct 18 15:34:23 2017 -0400 @@ -0,0 +1,46 @@ +<tool id="plot_force" name="Plot Network: Force Directed Network"> + <description></description> + <command interpreter="python">plotForce.py $node_attr $edges $ForceDirected \$INSTALL_RUN_PATH/</command> + <requirements> + <requirement type="set_environment">INSTALL_RUN_PATH</requirement> + </requirements> + <inputs> + <param format="tabular" name="node_attr" type="data" label="Node Attribute File"/> + <param type="sif" name="edges" type = data label="Network File"/> + </inputs> + <outputs> + <data format="html" name="ForceDirected" label="Force Directed Network"/> + </outputs> + <stdio> + <regex match="Error|error" + source="stdout" + level="fatal" + description="Unknown error"/> + <regex match="Error|error" + source="stderr" + level="fatal" + description="Unknown error"/> + </stdio> + + <tests> + <test> + <param name="input" value="fa_gc_content_input.fa"/> + <output name="out_file1" file="fa_gc_content_output.txt"/> + </test> + </tests> + <help> +Plot Force Directed Network +---------------------------------------- + +This tool reads in a network SIF file and it's corresponding node attributes +and plots an interactive force directed network in HMTL format + +**1) Node Attributes File ** + This file must be output from Network Attributes Tool of the network + file being input below. + +**2) Network File** + +Please input a network SIF file matching the Node Attribute file above + </help> +</tool>