Mercurial > repos > bornea > prohits_dotplot_generator
comparison ProHits_DotPlot_Generator.py @ 21:cfac73f960c8 draft
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| author | bornea |
|---|---|
| date | Thu, 14 Apr 2016 16:34:43 -0400 |
| parents | 3555f2c0d325 |
| children | 63cc1f29a57b |
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| 20:3555f2c0d325 | 21:cfac73f960c8 |
|---|---|
| 26 | 26 |
| 27 | 27 |
| 28 FDR1 = sys.argv[2] | 28 FDR1 = sys.argv[2] |
| 29 FDR2 = sys.argv[3] | 29 FDR2 = sys.argv[3] |
| 30 spec_max = sys.argv[4] | 30 spec_max = sys.argv[4] |
| 31 file_name = sys.argv[1] | 31 os.rename(sys.argv[1], "saint_input.txt") |
| 32 cmd0 = "cp " + str(file_name) + " ./" | |
| 33 os.system(cmd0) | |
| 34 input_file = file_name.split("/")[-1] | |
| 35 os.rename(input_file, "saint_input.txt") | |
| 36 ins_path = sys.argv[9] | 32 ins_path = sys.argv[9] |
| 37 | 33 |
| 38 dirs_list = [] | 34 dirs_list = [] |
| 39 for (dirpath, dirnames, filename) in os.walk(str(ins_path)): | 35 for (dirpath, dirnames, filename) in os.walk(str(ins_path)): |
| 40 dirs_list.extend(dirnames) | 36 dirs_list.extend(dirnames) |
