Mercurial > repos > bornea > prohits_dotplot_generator

comparison ProHits_DotPlot_Generator.py @ 29:16df07f285c0 draft default tip

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author bornea
date Tue, 19 Apr 2016 12:01:47 -0400
parents 63cc1f29a57b
children
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28:213e87eb9ade 29:16df07f285c0
43 43
44 44
45 cmd = (str(ins_path) + r"Dotplot_Release/dotplot.bash -f saint_input.txt" + r" -c b -s " + str(FDR1) + 45 cmd = (str(ins_path) + r"Dotplot_Release/dotplot.bash -f saint_input.txt" + r" -c b -s " + str(FDR1) +
46 r" -t " + str(FDR2) + " -m " + str(spec_max)) 46 r" -t " + str(FDR2) + " -m " + str(spec_max))
47 try: 47 try:
48 os.system(cmd) 48 os.system(cmd)
49 cmd1 = r"cp -a ./Output_saint_input/. ." 49 cmd1 = r"cp -a ./Output_saint_input/. ."
50 os.system(cmd1) 50 os.system(cmd1)
51 os.rename("saint_input.txt", str(sys.argv[1])) 51 os.rename("saint_input.txt", str(sys.argv[1]))
52 except: 52 except OSError:
53 os.rename("saint_input.txt", str(sys.argv[1])) 53 os.rename("saint_input.txt", str(sys.argv[1]))
54 print "DotPlot did not run correctly" 54 print "DotPlot did not run correctly"
55 sys.exit() 55 sys.exit()
56
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58 56
59 57
60 os.rename('dotplot.pdf', str(sys.argv[5])) 58 os.rename('dotplot.pdf', str(sys.argv[5]))
61 os.rename('bait2bait.pdf', str(sys.argv[6])) 59 os.rename('bait2bait.pdf', str(sys.argv[6]))
62 os.rename('estimated.pdf', str(sys.argv[7])) 60 os.rename('estimated.pdf', str(sys.argv[7]))