Mercurial > repos > bornea > prohits_dotplot_generator

changeset 27:63cc1f29a57b draft

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Uploaded
author bornea
date Tue, 19 Apr 2016 11:37:44 -0400
parents c0b883652821
children 213e87eb9ade
files ProHits_DotPlot_Generator.py
diffstat 1 files changed, 11 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/ProHits_DotPlot_Generator.py	Tue Apr 19 11:37:32 2016 -0400
+++ b/ProHits_DotPlot_Generator.py	Tue Apr 19 11:37:44 2016 -0400
@@ -44,12 +44,19 @@
 
 cmd = (str(ins_path) + r"Dotplot_Release/dotplot.bash -f saint_input.txt" + r" -c b -s " + str(FDR1) +
     r" -t " + str(FDR2) + " -m " + str(spec_max))
-os.system(cmd)
+try:
+	os.system(cmd)
+	cmd1 = r"cp -a ./Output_saint_input/. ."
+	os.system(cmd1)
+	os.rename("saint_input.txt", str(sys.argv[1]))
+except:
+	os.rename("saint_input.txt", str(sys.argv[1]))
+	print "DotPlot did not run correctly"
+	sys.exit()
 
-cmd1 = r"cp -a ./Output_saint_input/. ."
-os.system(cmd1)
+
 
-os.rename("saint_input.txt", str(sys.argv[1]))
+
 os.rename('dotplot.pdf', str(sys.argv[5])) 
 os.rename('bait2bait.pdf', str(sys.argv[6])) 
 os.rename('estimated.pdf', str(sys.argv[7]))