Mercurial > repos > bornea > saint_bubblebeam
comparison Bubblebeam_For_SAINT_wrapper.xml @ 8:318185488e49 draft
Uploaded
| author | bornea |
|---|---|
| date | Thu, 19 Nov 2015 10:43:31 -0500 |
| parents | 9ef129641cf1 |
| children | fcfcbdcde66f |
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| 7:9ef129641cf1 | 8:318185488e49 |
|---|---|
| 1 <tool id="Bubblebeam_For_SAINT" name="Bubblebeam For SAINT"> | 1 <tool id="Bubblebeam_For_SAINT" name="Bubblebeam For SAINT"> |
| 2 <description></description> | 2 <description></description> |
| 3 <command interpreter="python">Bubblebeam_For_SAINT_wrapper.py $list_file $prey_file $crapome $color $label $cutoff $type $inc_file $ exc_file $outfile $NSAF_zoom $SAINT_zoom $SAINT $NSAF \$INSTALL_RUN_PATH/</command> | 3 <command interpreter="python">Bubblebeam_For_SAINT_wrapper.py $list_file $prey_file $crapome $color $label $cutoff $type $inc_file $exc_file $outfile $NSAF_zoom $SAINT_zoom $SAINT $NSAF \$INSTALL_RUN_PATH/</command> |
| 4 <requirements> | 4 <requirements> |
| 5 <requirement type="set_environment">INSTALL_RUN_PATH</requirement> | 5 <requirement type="set_environment">INSTALL_RUN_PATH</requirement> |
| 6 </requirements> | 6 </requirements> |
| 7 <inputs> | 7 <inputs> |
| 8 <param type="select" name="type" label="MaxQuant or Scaffold"> | 8 <param type="select" name="type" label="MaxQuant or Scaffold"> |
| 10 <option value="SC">Scaffold</option> | 10 <option value="SC">Scaffold</option> |
| 11 </param> | 11 </param> |
| 12 <param format="txt" name="list_file" type="data" label="List File"/> | 12 <param format="txt" name="list_file" type="data" label="List File"/> |
| 13 <param format="txt" name="prey_file" type="data" label="Prey File"/> | 13 <param format="txt" name="prey_file" type="data" label="Prey File"/> |
| 14 <param format="txt" name="crapome" type="data" label="Crapome File" optional="true"/> | 14 <param format="txt" name="crapome" type="data" label="Crapome File" optional="true"/> |
| 15 <param name="color" type="select" label="Color" optional="true"> | 15 <param name="color" type="select" label="Color"> |
| 16 <option value="crapome">Crapome</option> | 16 <option value="crapome">Crapome</option> |
| 17 <option value="red">Red</option> | 17 <option value="red">Red</option> |
| 18 <option value="blue">Blue</option> | 18 <option value="blue">Blue</option> |
| 19 </param> | 19 </param> |
| 20 <param type="boolean" name="label" checked="true" label="Use Labels"/> | 20 <param type="boolean" name="label" checked="true" label="Use Labels"/> |