Mercurial > repos > bornea > saint_bubblebeam
comparison Bubblebeam_For_SAINT_wrapper.xml @ 5:9929e63b0505 draft
Uploaded
| author | bornea |
|---|---|
| date | Thu, 19 Nov 2015 10:34:32 -0500 |
| parents | d3be2b91e8d4 |
| children | a5f4ec159731 |
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| 4:8eb1dd926f6e | 5:9929e63b0505 |
|---|---|
| 1 <tool id="Bubblebeam_For_SAINT" name="Bubblebeam For SAINT"> | 1 <tool id="Bubblebeam_For_SAINT" name="Bubblebeam For SAINT"> |
| 2 <description></description> | 2 <description></description> |
| 3 <command interpreter="python">Bubblebeam_For_SAINT_wrapper.py $list_file $prey_file $crapome $color $label $cutoff $type $outfile $NSAF_zoom $SAINT_zoom $SAINT $NSAF \$INSTALL_RUN_PATH/</command> | 3 <command interpreter="python">Bubblebeam_For_SAINT_wrapper.py $list_file $prey_file $crapome $color $label $cutoff $type $inc_file $ exc_file $outfile $NSAF_zoom $SAINT_zoom $SAINT $NSAF \$INSTALL_RUN_PATH/</command> |
| 4 <requirements> | 4 <requirements> |
| 5 <requirement type="set_environment">INSTALL_RUN_PATH</requirement> | 5 <requirement type="set_environment">INSTALL_RUN_PATH</requirement> |
| 6 </requirements> | 6 </requirements> |
| 7 <inputs> | 7 <inputs> |
| 8 <param type="select" name="type" label="MaxQuant or Scaffold"> | 8 <param type="select" name="type" label="MaxQuant or Scaffold"> |
| 17 <option value="red">Red</option> | 17 <option value="red">Red</option> |
| 18 <option value="blue">Blue</option> | 18 <option value="blue">Blue</option> |
| 19 </param> | 19 </param> |
| 20 <param type="boolean" name="label" checked="true" label="Use Labels"/> | 20 <param type="boolean" name="label" checked="true" label="Use Labels"/> |
| 21 <param type="float" name="cutoff" label="SAINT Score Cutoff" help="Select a value between 0 and 1 written like 0.8." value="0.8"/> | 21 <param type="float" name="cutoff" label="SAINT Score Cutoff" help="Select a value between 0 and 1 written like 0.8." value="0.8"/> |
| 22 <param format="txt" name="inc_file" type="data" label=+"List of Uniprot IDs to Include" optional="true"?> | |
| 23 <param format="txt" name="exc_file" type="data" label=+"List of Uniprot IDs to Include" optional="true"?> | |
| 22 </inputs> | 24 </inputs> |
| 23 <outputs> | 25 <outputs> |
| 24 <data format="txt" name="outfile" label="Outfile"/> | 26 <data format="txt" name="outfile" label="Outfile"/> |
| 25 <data format="png" name="NSAF_zoom" label="Zoom NSAF" /> | 27 <data format="png" name="NSAF_zoom" label="Zoom NSAF" /> |
| 26 <data format="png" name="SAINT_zoom" label="Zoom SAINT" /> | 28 <data format="png" name="SAINT_zoom" label="Zoom SAINT" /> |