Mercurial > repos > bornea > saint_bubblebeam
diff Bubblebeam_For_SAINT_wrapper.py @ 18:e992232032ae draft
Uploaded
author | bornea |
---|---|
date | Fri, 20 Nov 2015 11:14:37 -0500 |
parents | b11a6884496e |
children | 7ce59d092bae |
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--- a/Bubblebeam_For_SAINT_wrapper.py Fri Nov 20 11:10:22 2015 -0500 +++ b/Bubblebeam_For_SAINT_wrapper.py Fri Nov 20 11:14:37 2015 -0500 @@ -30,7 +30,7 @@ elif label == "true": label = "TRUE" -cmd = r"Rscript "+ str(ins_path) + r"/bubbles_v9_NSAF_natural_log.R " + str(list_file) + r" " + str(prey_file) + r" " + str(crapome) + r" " + str(color) + r" " + str(label) + r" " + str(cutoff) + r" " + str(mq_sc) + r" " + str(inc_file) + r" " + str(exc_file) +cmd = str(ins_path) +r"/Rscript "+ str(ins_path) + r"/bubbles_v9_NSAF_natural_log.R " + str(list_file) + r" " + str(prey_file) + r" " + str(crapome) + r" " + str(color) + r" " + str(label) + r" " + str(cutoff) + r" " + str(mq_sc) + r" " + str(inc_file) + r" " + str(exc_file) os.system(cmd) time.sleep(3)