Mercurial > repos > bornea > saint_bubblebeam

diff Bubblebeam_For_SAINT_wrapper.xml @ 14:fcfcbdcde66f draft

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author bornea
date Fri, 20 Nov 2015 11:00:54 -0500
parents 318185488e49
children 54102aee991e
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--- a/Bubblebeam_For_SAINT_wrapper.xml	Fri Nov 20 11:00:42 2015 -0500
+++ b/Bubblebeam_For_SAINT_wrapper.xml	Fri Nov 20 11:00:54 2015 -0500
@@ -1,8 +1,10 @@
 <tool id="Bubblebeam_For_SAINT" name="Bubblebeam For SAINT">
   <description></description>
-  <command interpreter="python">Bubblebeam_For_SAINT_wrapper.py $list_file $prey_file $crapome $color $label $cutoff $type $inc_file $exc_file $outfile $NSAF_zoom $SAINT_zoom $SAINT $NSAF \$INSTALL_RUN_PATH/</command>
+  <command interpreter="python">Bubblebeam_For_SAINT_wrapper.py $list_file $prey_file $crapome $color $label $cutoff $type $inc_file $exc_file $outfile $NSAF_zoom $SAINT_zoom $SAINT $NSAF \$INSTALL_RUN_PATH/ \$R_ROOT_DIR/</command>
   <requirements>
     <requirement type="set_environment">INSTALL_RUN_PATH</requirement>
+    <requirement type="package" version="3.2.1">package_r_3_2_1</requirement>
+    <requirement type="set_environment">R_ROOT_DIR</requirement>
   </requirements>
   <inputs>
     <param type="select" name="type" label="MaxQuant or Scaffold">