Mercurial > repos > bornea > saint_bubblebeam

diff Bubblebeam_For_SAINT_wrapper.py @ 29:f7b1fe03fb5b draft default tip

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author bornea
date Fri, 29 Jan 2016 09:39:22 -0500
parents cb7223752458
children
line wrap: on
line diff
--- a/Bubblebeam_For_SAINT_wrapper.py	Fri Jan 29 09:37:09 2016 -0500
+++ b/Bubblebeam_For_SAINT_wrapper.py	Fri Jan 29 09:39:22 2016 -0500
@@ -58,9 +58,9 @@
 elif label == "true":
     label = "TRUE"
 
-cmd = r"Rscript "+ str(ins_path) + r"/bubbles_v9_NSAF_natural_log.R " + str(list_file) + r" "
+cmd = (r"Rscript "+ str(ins_path) + r"/bubbles_v9_NSAF_natural_log.R " + str(list_file) + r" "
     + str(prey_file) + r" " + str(crapome) + r" " + str(color) + r" " + str(label) + r" "
-    + str(cutoff) + r" " + str(mq_sc) + r" " + str(inc_file) + r" " + str(exc_file)
+    + str(cutoff) + r" " + str(mq_sc) + r" " + str(inc_file) + r" " + str(exc_file))
 os.system(cmd)
 time.sleep(3)