# HG changeset patch # User bornea # Date 1454078229 18000 # Node ID 24d4f1350c833a57e559956c2203924d1dd02f02 # Parent ab9ace68e3b5871c3aa2f2d71a14ec6bd51b642d Uploaded diff -r ab9ace68e3b5 -r 24d4f1350c83 Bubblebeam_For_SAINT_wrapper.xml --- a/Bubblebeam_For_SAINT_wrapper.xml Fri Jan 29 09:34:17 2016 -0500 +++ b/Bubblebeam_For_SAINT_wrapper.xml Fri Jan 29 09:37:09 2016 -0500 @@ -60,9 +60,9 @@ Bubble graphs are generated for each bait where: -* x axis is the natural log of the NSAF values -* y axis is the observed log2 fold change (as compared to control) -* bubble radius is proportional to the average observed spectra + * x axis is the natural log of the NSAF values + * y axis is the observed log2 fold change (as compared to control) + * bubble radius is proportional to the average observed spectra OPTIONAL: bubble color corresponds to the CRAPome probability of a specific interaction in which an 80% cutoff is applied where prey with less than 80% are colored tan @@ -112,10 +112,10 @@ Suggestions: -* low: 0 -* medium: 0.5 -* high: 0.7 -* very high: 0.9 + * low: 0 + * medium: 0.5 + * high: 0.7 + * very high: 0.9 List of Uniprot IDs to Include: