# HG changeset patch
# User bornea
# Date 1448035804 18000
# Node ID 54102aee991ec8df10ad459e732166df12979738
# Parent  97066b15511133d0dcfb67d3459673ca555b4ff2
Uploaded

diff -r 97066b155111 -r 54102aee991e Bubblebeam_For_SAINT_wrapper.xml
--- a/Bubblebeam_For_SAINT_wrapper.xml	Fri Nov 20 11:01:10 2015 -0500
+++ b/Bubblebeam_For_SAINT_wrapper.xml	Fri Nov 20 11:10:04 2015 -0500
@@ -1,10 +1,9 @@
 <tool id="Bubblebeam_For_SAINT" name="Bubblebeam For SAINT">
   <description></description>
-  <command interpreter="python">Bubblebeam_For_SAINT_wrapper.py $list_file $prey_file $crapome $color $label $cutoff $type $inc_file $exc_file $outfile $NSAF_zoom $SAINT_zoom $SAINT $NSAF \$INSTALL_RUN_PATH/ \$R_ROOT_DIR/</command>
+  <command interpreter="python">Bubblebeam_For_SAINT_wrapper.py $list_file $prey_file $crapome $color $label $cutoff $type $inc_file $exc_file $outfile $NSAF_zoom $SAINT_zoom $SAINT $NSAF \$INSTALL_RUN_PATH/</command>
   <requirements>
     <requirement type="set_environment">INSTALL_RUN_PATH</requirement>
     <requirement type="package" version="3.2.1">package_r_3_2_1</requirement>
-    <requirement type="set_environment">R_ROOT_DIR</requirement>
   </requirements>
   <inputs>
     <param type="select" name="type" label="MaxQuant or Scaffold">