# HG changeset patch
# User bornea
# Date 1448039064 18000
# Node ID 7ce59d092bae6c1c6cda8c2b81fd8d672155e92a
# Parent  964a825270fff536bac2cc73a979bab9879911ac
Uploaded

diff -r 964a825270ff -r 7ce59d092bae Bubblebeam_For_SAINT_wrapper.py
--- a/Bubblebeam_For_SAINT_wrapper.py	Fri Nov 20 12:03:57 2015 -0500
+++ b/Bubblebeam_For_SAINT_wrapper.py	Fri Nov 20 12:04:24 2015 -0500
@@ -18,8 +18,6 @@
 bub_SAINT = sys.argv[13]
 bub_NSAF = sys.argv[14]
 ins_path =sys.argv[15]
-#r_path = sys.argv[16]
-#r_path = str(r_path) + r"bin/"
 
 if crapome == "None":
 	crapome = "FALSE"
@@ -30,7 +28,7 @@
 elif label == "true":
 	label = "TRUE" 
 
-cmd = str(ins_path) +r"/Rscript "+ str(ins_path) + r"/bubbles_v9_NSAF_natural_log.R " + str(list_file) + r" " + str(prey_file) + r" " + str(crapome) + r" " + str(color) + r" " + str(label) + r" " + str(cutoff) + r" " + str(mq_sc) + r" " + str(inc_file) + r" " + str(exc_file)
+cmd = r"Rscript "+ str(ins_path) + r"/bubbles_v9_NSAF_natural_log.R " + str(list_file) + r" " + str(prey_file) + r" " + str(crapome) + r" " + str(color) + r" " + str(label) + r" " + str(cutoff) + r" " + str(mq_sc) + r" " + str(inc_file) + r" " + str(exc_file)
 os.system(cmd)
 time.sleep(3)