# HG changeset patch
# User bornea
# Date 1447947272 18000
# Node ID 9929e63b0505f06190667ca0254c639483ca7e95
# Parent  8eb1dd926f6e859aa270a0ae7320e8e8e9a3f7a7
Uploaded

diff -r 8eb1dd926f6e -r 9929e63b0505 Bubblebeam_For_SAINT_wrapper.xml
--- a/Bubblebeam_For_SAINT_wrapper.xml	Thu Nov 19 10:26:48 2015 -0500
+++ b/Bubblebeam_For_SAINT_wrapper.xml	Thu Nov 19 10:34:32 2015 -0500
@@ -1,6 +1,6 @@
 <tool id="Bubblebeam_For_SAINT" name="Bubblebeam For SAINT">
   <description></description>
-  <command interpreter="python">Bubblebeam_For_SAINT_wrapper.py $list_file $prey_file $crapome $color $label $cutoff $type $outfile $NSAF_zoom $SAINT_zoom $SAINT $NSAF \$INSTALL_RUN_PATH/</command>
+  <command interpreter="python">Bubblebeam_For_SAINT_wrapper.py $list_file $prey_file $crapome $color $label $cutoff $type $inc_file $ exc_file $outfile $NSAF_zoom $SAINT_zoom $SAINT $NSAF \$INSTALL_RUN_PATH/</command>
   <requirements>
     <requirement type="set_environment">INSTALL_RUN_PATH</requirement>
   </requirements>
@@ -19,6 +19,8 @@
     </param>
     <param type="boolean" name="label" checked="true" label="Use Labels"/>
     <param type="float" name="cutoff" label="SAINT Score Cutoff" help="Select a value between 0 and 1 written like 0.8." value="0.8"/>
+    <param format="txt" name="inc_file" type="data" label=+"List of Uniprot IDs to Include" optional="true"?>
+    <param format="txt" name="exc_file" type="data" label=+"List of Uniprot IDs to Include" optional="true"?>
   </inputs>
   <outputs>
     <data format="txt" name="outfile" label="Outfile"/>