# HG changeset patch
# User bornea
# Date 1448035822 18000
# Node ID b11a6884496e918d42ddfa5e4bccce16bfba254f
# Parent  54102aee991ec8df10ad459e732166df12979738
Uploaded

diff -r 54102aee991e -r b11a6884496e Bubblebeam_For_SAINT_wrapper.py
--- a/Bubblebeam_For_SAINT_wrapper.py	Fri Nov 20 11:10:04 2015 -0500
+++ b/Bubblebeam_For_SAINT_wrapper.py	Fri Nov 20 11:10:22 2015 -0500
@@ -18,8 +18,8 @@
 bub_SAINT = sys.argv[13]
 bub_NSAF = sys.argv[14]
 ins_path =sys.argv[15]
-r_path = sys.argv[16]
-r_path = str(r_path) + r"bin/"
+#r_path = sys.argv[16]
+#r_path = str(r_path) + r"bin/"
 
 if crapome == "None":
 	crapome = "FALSE"
@@ -30,7 +30,7 @@
 elif label == "true":
 	label = "TRUE" 
 
-cmd = str(r_path) + r"Rscript "+ str(ins_path) + r"/bubbles_v9_NSAF_natural_log.R " + str(list_file) + r" " + str(prey_file) + r" " + str(crapome) + r" " + str(color) + r" " + str(label) + r" " + str(cutoff) + r" " + str(mq_sc) + r" " + str(inc_file) + r" " + str(exc_file)
+cmd = r"Rscript "+ str(ins_path) + r"/bubbles_v9_NSAF_natural_log.R " + str(list_file) + r" " + str(prey_file) + r" " + str(crapome) + r" " + str(color) + r" " + str(label) + r" " + str(cutoff) + r" " + str(mq_sc) + r" " + str(inc_file) + r" " + str(exc_file)
 os.system(cmd)
 time.sleep(3)