Mercurial > repos > bornea > saint_preproc
comparison SAINT_preprocessing_v6.py @ 18:b230824e1a0e draft
Uploaded
author | bornea |
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date | Tue, 17 Nov 2015 12:18:30 -0500 |
parents | 40c88c39f8d7 |
children |
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17:40c88c39f8d7 | 18:b230824e1a0e |
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148 seqlength = seqlength + len(lines[match].strip()) | 148 seqlength = seqlength + len(lines[match].strip()) |
149 match = match + 1 | 149 match = match + 1 |
150 else: | 150 else: |
151 break | 151 break |
152 return ReturnValue1(seqlength, genename) | 152 return ReturnValue1(seqlength, genename) |
153 elif uniprot_accession_in == namer.split(" "): | 153 elif uniprot_accession_in == namer.split(" ")[0]: |
154 match = count+1 | 154 match = count+1 |
155 if 'GN=' in i: | 155 if 'GN=' in i: |
156 lst = i.split('GN=') | 156 lst = i.split('GN=') |
157 lst2 = lst[1].split(' ') | 157 lst2 = lst[1].split(' ') |
158 genename = lst2[0] | 158 genename = lst2[0] |