comparison SAINT_preprocessing.py @ 15:876af85d782c draft

Uploaded

14:c22c1209e65f

        if baits[i+2] == "true":
            T_C = "C"
        else:
            T_C = "T"
        bait_line = baits[i] + "\t" + baits[i+1] + "\t" + T_C + "\n"
        read_infile = open(infile, "r")
        for input_line in read_infile:
            input_line = input_line.strip()
            temp = input_line.split('\t')
            bait_cache.append((number_bait, str(bait_line)))
        i = i + 3

    bait_cache.sort()
    for cache_line in bait_cache:
        bait_file_tmp.write(cache_line[1])

    bait_file_tmp.close()

15:876af85d782c

        if baits[i+2] == "true":
            T_C = "C"
        else:
            T_C = "T"
        bait_line = baits[i] + "\t" + baits[i+1] + "\t" + T_C + "\n"
        bait_cach.append(str(bait_line))
        i = i + 3

    for cache_line in bait_cache:
        bait_file_tmp.write(cache_line[1])

    bait_file_tmp.close()