comparison SAINT_preprocessing_mq_pep.py @ 36:bc9c7764cc2f draft

Uploaded

35:26cc583a4ae4

        bait_index.append(header.index(bait_item[0]))
    proteins = read_MaxQuant(MaxQuant_input).proteins
    errors = []
    for e in err:
        errors.append(e[0])
    with open('inter.txt', 'w') as input_file:
        l = 0; a = 0
        for bb in bait:
            for lst in data:
                if proteins[a] not in errors:

36:bc9c7764cc2f

        bait_index.append(header.index(bait_item[0]))
    proteins = read_MaxQuant(MaxQuant_input).proteins
    errors = []
    for e in err:
        errors.append(e[0])
    for a in proteins:
        a = a.replace("\n", "")
        # Remove \n for input into function.
        a = a.replace("\r", "")
        # Ditto for \r.
        seq = get_info(a).seqlength
        GN = get_info(a).genename
        if seq != 'NA':
            if GN != 'NA':
                erros.append[a]
    with open('inter.txt', 'w') as input_file:
        l = 0; a = 0
        for bb in bait:
            for lst in data:
                if proteins[a] not in errors: