Mercurial > repos > bornea > saint_preprocessing

comparison flatten_mzIdentML.R @ 66:d8cc862e6412 draft

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author bornea
date Sat, 27 Aug 2016 22:14:02 -0400
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children 47aa4f551c53
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65:a551998e1068 66:d8cc862e6412
1 #! /usr/bin/Rscript
2 args <- commandArgs(trailingOnly = TRUE)
3 #source("https://bioconductor.org/biocLite.R")
4 #biocLite("mzID")
5 library(mzID)
6 library(dplyr)
7 mzResults <- mzID(args[1])
8 flatresults <- flatten(mzResults)
9 write.table(flatresults,"flat_mzIdentML.txt",sep="\t",quote=FALSE,row.names=FALSE)