# HG changeset patch # User bornea # Date 1472356654 14400 # Node ID 47aa4f551c53968cf8ae7a12e5f968b715d7ea4f # Parent 50391fdc229ae02b6f19db4854bddccb896fa57b Uploaded diff -r 50391fdc229a -r 47aa4f551c53 flatten_mzIdentML.R --- a/flatten_mzIdentML.R Sat Aug 27 23:37:08 2016 -0400 +++ b/flatten_mzIdentML.R Sat Aug 27 23:57:34 2016 -0400 @@ -1,4 +1,17 @@ #! /usr/bin/Rscript +ins_check_run <- function() { + if ("mzID" %in% rownames(installed.packages())){} + else { + source("https://bioconductor.org/biocLite.R") + biocLite('mzID') + } + if ('dplyr' %in% rownames(installed.packages())){} + else { + install.packages('dplyr', repos='http://cran.us.r-project.org') + } +} + +ins_check_run() args <- commandArgs(trailingOnly = TRUE) #source("https://bioconductor.org/biocLite.R") #biocLite("mzID")