# HG changeset patch # User bornea # Date 1461702073 14400 # Node ID 761e1ad2b1303a7ce46dbc4b61d4a9f631ca57f4 # Parent e6e456d3ac1486b2750cb493715312aee8d23401 Uploaded diff -r e6e456d3ac14 -r 761e1ad2b130 SAINT_preprocessing_mq_pep.py --- a/SAINT_preprocessing_mq_pep.py Tue Apr 26 16:16:56 2016 -0400 +++ b/SAINT_preprocessing_mq_pep.py Tue Apr 26 16:21:13 2016 -0400 @@ -40,9 +40,10 @@ os.system(cmd) else: cmd = (r"Rscript "+ str(ins_path) +"pre_process_protein_name_set.R " + str(mq_file) + - " " + str(fasta_db) + " " + str(fasta_db)) os.system(cmd) + infile = "./tukeys_output.txt" # The MaxQuant "Samples Report" output. prey = sys.argv[2]