Mercurial > repos > bornea > saint_preprocessing
changeset 60:3c0ed536029e draft
Uploaded
| author | bornea |
|---|---|
| date | Sat, 27 Aug 2016 21:29:26 -0400 |
| parents | 5ad68d3a11cc |
| children | 0b4450bdc6a9 |
| files | SAINT_preprocessing.xml |
| diffstat | 1 files changed, 4 insertions(+), 4 deletions(-) [+] |
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--- a/SAINT_preprocessing.xml Sat Aug 27 21:13:21 2016 -0400 +++ b/SAINT_preprocessing.xml Sat Aug 27 21:29:26 2016 -0400 @@ -1,7 +1,7 @@ <tool id="SAINT_preprocessing_v5" name="SAINT pre-processing"> <description></description> <command interpreter="python"> - #if (str($type) == 'Scaffold'): + #if (str($type_select.type) == 'Scaffold'): SAINT_preprocessing.py $input $preybool $fasta_db $Inter_file $Prey_file " #for $ba in $bait @@ -11,7 +11,7 @@ #end for " $Bait_file \$INSTALL_RUN_PATH/ $bait_bool $bait_file_in - #elif (str($type) == 'MaxQuant'): + #elif (str($type_select.type) == 'MaxQuant'): SAINT_preprocessing_mq_pep.py $input $preybool $fasta_db $Inter_file $Prey_file " #for $ba in $bait @@ -21,7 +21,7 @@ #end for " $Bait_file \$INSTALL_RUN_PATH/ $bait_bool $bait_file_in - #elif (str($type) == 'Peptideshaker'): + #elif (str($type_select.type) == 'Peptideshaker'): Protein_report_processing.py "$input" $Bait_file $use_metric $fasta_db $preybool " #for $ba in $bait @@ -38,7 +38,7 @@ </requirements> <inputs> <conditional name="type_select"> - <param type="select" name="type" label="MaxQuant or Scaffold"> + <param type="select" name="type" label="Data Source"> <option value="MaxQuant">MaxQuant</option> <option value="Scaffold">Scaffold</option> <option value="Peptideshaker">Peptideshaker</option>