Mercurial > repos > bornea > saint_preprocessing
changeset 52:8031a47f67c6 draft
Uploaded
| author | bornea |
|---|---|
| date | Wed, 08 Jun 2016 10:36:32 -0400 |
| parents | 09b89febcf98 |
| children | 26b5bd96332e |
| files | SAINT_preprocessing.xml |
| diffstat | 1 files changed, 13 insertions(+), 5 deletions(-) [+] |
line wrap: on
line diff
--- a/SAINT_preprocessing.xml Thu May 19 12:12:00 2016 -0400 +++ b/SAINT_preprocessing.xml Wed Jun 08 10:36:32 2016 -0400 @@ -32,7 +32,7 @@ <option value="MaxQuant">MaxQuant</option> <option value="Scaffold">Scaffold</option> </param> - <param format="dat" name="input" type="data" label="Scaffold or MaxQuant proteinGroup Output"/> + <param format="dat" name="input" type="data" label="Scaffold or MaxQuant peptides Output"/> <param type="boolean" name="preybool" checked="true" label="Create Prey File"/> <param type="data" name="fasta_db" format="fasta" label="Provide Uniprot Fasta database" optional="true"/> <param name="bait_bool" type="boolean" checked="true" label="Are You Providing Your Own bait file?"/> @@ -50,6 +50,18 @@ <data format="txt" name="Bait_file" label="Bait File" /> </outputs> <stdio> + <regex match="Error: bad bait" + source="stdout" + level="fatal" + description="Error: bad bait"/> + <regex match="IOError: [Errno 2] No such file or directory: './tukeys_output.txt'" + source="stderr" + level="fatal" + description="Error: Scaffold/MaxQuant mismatch. Check job settings."/> + <regex match="bait_temp_file = open(sys.argv[10], 'r')" + source="stderr" + level="fatal" + description="Error: Bait create settings mismatch. Check job settings."/> <regex match="Error|error" source="stdout" level="fatal" @@ -58,10 +70,6 @@ source="stderr" level="fatal" description="Unknown error"/> - <regex match="Error: bad bait" - source="stdout" - level="fatal" - description="Error: bad bait"/> </stdio> <tests>