Mercurial > repos > bornea > saint_preprocessing
changeset 62:81db20bfc349 draft
Uploaded
| author | bornea |
|---|---|
| date | Sat, 27 Aug 2016 21:42:13 -0400 |
| parents | 0b4450bdc6a9 |
| children | 1972ccdbeb16 |
| files | SAINT_preprocessing.xml |
| diffstat | 1 files changed, 6 insertions(+), 6 deletions(-) [+] |
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--- a/SAINT_preprocessing.xml Sat Aug 27 21:38:03 2016 -0400 +++ b/SAINT_preprocessing.xml Sat Aug 27 21:42:13 2016 -0400 @@ -2,7 +2,7 @@ <description></description> <command interpreter="python"> #if (str($type_select.type) == 'Scaffold'): - SAINT_preprocessing.py $type_select.input $type_select.preybool $type_select.fasta_db $type_select.Inter_file $type_select.Prey_file + SAINT_preprocessing.py $type_select.input $type_select.preybool $type_select.fasta_db $Inter_file $Prey_file " #for $ba in $bait ${ba.bait1} @@ -10,9 +10,9 @@ ${ba.T_C} #end for " - $type_select.Bait_file \$INSTALL_RUN_PATH/ $type_select.bait_bool $type_select.bait_file_in + $Bait_file \$INSTALL_RUN_PATH/ $type_select.bait_bool $type_select.bait_file_in #elif (str($type_select.type) == 'MaxQuant'): - SAINT_preprocessing_mq_pep.py $type_select.input $type_select.preybool $type_select.fasta_db $type_select.Inter_file $type_select.Prey_file + SAINT_preprocessing_mq_pep.py $type_select.input $type_select.preybool $type_select.fasta_db $Inter_file $Prey_file " #for $ba in $bait ${ba.bait1} @@ -20,9 +20,9 @@ ${ba.T_C} #end for " - $type_select.Bait_file \$INSTALL_RUN_PATH/ $type_select.bait_bool $type_select.bait_file_in + $Bait_file \$INSTALL_RUN_PATH/ $type_select.bait_bool $type_select.bait_file_in #elif (str($type_select.type) == 'Peptideshaker'): - Protein_report_processing.py "$type_select.input" $type_select.Bait_file $type_select.use_metric $type_select.fasta_db $type_select.preybool + Protein_report_processing.py "$type_select.input" $Bait_file $type_select.use_metric $type_select.fasta_db $type_select.preybool " #for $ba in $bait ${ba.bait1} @@ -30,7 +30,7 @@ ${ba.T_C} #end for " - \$INSTALL_RUN_PATH/ $type_select.bait_bool $type_select.bait_file_in $type_select.Inter_file $type_select.Prey_file + \$INSTALL_RUN_PATH/ $type_select.bait_bool $type_select.bait_file_in $Inter_file $Prey_file #end if </command> <requirements>