Mercurial > repos > bornea > saint_preprocessing

changeset 15:876af85d782c draft

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Uploaded
author bornea
date Tue, 12 Apr 2016 15:05:52 -0400
parents c22c1209e65f
children 4b43913630d0
files SAINT_preprocessing.py
diffstat 1 files changed, 1 insertions(+), 6 deletions(-) [+]
line wrap: on
line diff
--- a/SAINT_preprocessing.py	Tue Apr 12 14:55:25 2016 -0400
+++ b/SAINT_preprocessing.py	Tue Apr 12 15:05:52 2016 -0400
@@ -53,14 +53,9 @@
         else:
             T_C = "T"
         bait_line = baits[i] + "\t" + baits[i+1] + "\t" + T_C + "\n"
-        read_infile = open(infile, "r")
-        for input_line in read_infile:
-            input_line = input_line.strip()
-            temp = input_line.split('\t')
-            bait_cache.append((number_bait, str(bait_line)))
+        bait_cach.append(str(bait_line))
         i = i + 3
 
-    bait_cache.sort()
     for cache_line in bait_cache:
         bait_file_tmp.write(cache_line[1])