Mercurial > repos > bornea > saint_preprocessing_peptideshaker
diff Protein_report_processing.py @ 5:39e772aa6e93 draft
Uploaded
| author | bornea |
|---|---|
| date | Tue, 23 Aug 2016 19:06:34 -0400 |
| parents | 5a67d55bb091 |
| children | e1d6909836cd |
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--- a/Protein_report_processing.py Tue Aug 23 18:57:40 2016 -0400 +++ b/Protein_report_processing.py Tue Aug 23 19:06:34 2016 -0400 @@ -12,8 +12,8 @@ db = sys.argv[4] # fasta database used in SearchGUI and PeptideShaker prey = sys.argv[5] tool_path = sys.argv[7] -if fasta_db == "None": - fasta_db = str(tool_path) + "/SwissProt_HUMAN_2015_12.fasta" +if db == "None": + db = str(tool_path) + "/SwissProt_HUMAN_2015_12.fasta" make_bait = sys.argv[6] bait_bool = sys.argv[8]