# HG changeset patch
# User bornea
# Date 1471994789 14400
# Node ID 6d61b698125d776137b8ae5bfe1af04e1845ec81
# Parent  9ec349fd0e66214eb627ee58d9321e0443b43e95
Uploaded

diff -r 9ec349fd0e66 -r 6d61b698125d Protein_report_processing.xml
--- a/Protein_report_processing.xml	Tue Aug 23 19:26:13 2016 -0400
+++ b/Protein_report_processing.xml	Tue Aug 23 19:26:29 2016 -0400
@@ -16,11 +16,11 @@
   <inputs>
     <param format="dat" name="input" type="data" label="Scaffold or MaxQuant peptides Output" multiple="true"/>
     <param type="select" name="use_metric" label="Select Report File Value for Qunatification">
-      <option value="#Validated Peptides">#Validated Peptides</option>
-      <option value="#Peptides">#Peptides</option>
-      <option value="#Unique">#Unique</option> 
-      <option value="#Validated PSMs">#Validated PSMs</option>
-      <option value="#PSMs">#PSMs</option> 
+      <option value="Validated_Peptides">#Validated Peptides</option>
+      <option value="Peptides">#Peptides</option>
+      <option value="Unique">#Unique</option> 
+      <option value="Validated_PSMs">#Validated PSMs</option>
+      <option value="PSMs">#PSMs</option> 
     </param>
     <param type="boolean" name="preybool" checked="true" label="Create Prey File"/>
     <param type="data" name="fasta_db" format="fasta"  label="Provide Uniprot Fasta database" optional="true"/>