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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <set_environment version="1.0">
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4 <environment_variable name="R_SCRIPT_PATH" action="set_to">$REPOSITORY_INSTALL_DIR/bubblebeam</environment_variable>
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5 </set_environment>
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6 <package name="R" version="2.15.1">
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7 <install version="1.0">
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8 <actions>
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9 <action type="shell_command">git clone http://github.com/bornea/Saint_On_Galaxy</action>
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10 <action type="shell_command">unzip SAINTexpress_v3.6.1__2015-05-03.zip</action>
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11 <action type="shell_command">./make -j</action>
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12 <action type="set_environment">
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13 <environment_variable name="PATH" action="prepend_to">$REPOSITORY_INSTALL_DIR/Saint_On_Galaxy/SAINTexpress_v3.6.1__2015-05-03/bin</environment_variable>
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14 </action>
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15 </actions>
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16 </install>
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17 <readme></readme>
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18 </package>
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19 </tool_dependency> |
