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comparison tool_dependencies.xml @ 18:a10103767f49 draft

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author bornea
date Tue, 17 Nov 2015 12:31:19 -0500
parents 6d750e5e72e2
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17:73476fc784cc 18:a10103767f49
4 <environment_variable name="R_SCRIPT_PATH" action="set_to">$REPOSITORY_INSTALL_DIR/bubblebeam</environment_variable> 4 <environment_variable name="R_SCRIPT_PATH" action="set_to">$REPOSITORY_INSTALL_DIR/bubblebeam</environment_variable>
5 </set_environment>--> 5 </set_environment>-->
6 <package name="saintexpress"> 6 <package name="saintexpress">
7 <install> 7 <install>
8 <actions> 8 <actions>
9 <action type="shell_command">git clone http://github.com/bornea/Saint_On_Galaxy</action> 9 <action type="shell_command">git clone http://github.com/bornea/Saint_On_Galaxy.git sog</action>
10 <action type="shell_command">unzip SAINTexpress_v3.6.1__2015-05-03.zip</action> 10 <action type="shell_command">unzip SAINTexpress_v3.6.1__2015-05-03.zip</action>
11 <action type="shell_command">./make -j</action> 11 <action type="shell_command">./make -j</action>
12 <action type="set_environment"> 12 <action type="set_environment">
13 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/Saint_On_Galaxy/SAINTexpress_v3.6.1__2015-05-03/bin</environment_variable> 13 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/Saint_On_Galaxy/SAINTexpress_v3.6.1__2015-05-03/bin</environment_variable>
14 </action> 14 </action>