Mercurial > repos > bornea > saint_tool

diff tool_dependencies.xml @ 1:d963be0ebf53 draft

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author bornea
date Tue, 10 Nov 2015 11:39:43 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Tue Nov 10 11:39:43 2015 -0500
@@ -0,0 +1,19 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <set_environment version="1.0">
+        <environment_variable name="R_SCRIPT_PATH" action="set_to">$REPOSITORY_INSTALL_DIR/bubblebeam</environment_variable>   
+    </set_environment>
+    <package name="R" version="2.15.1">
+        <install version="1.0">
+            <actions>
+                <action type="shell_command">git clone http://github.com/bornea/Saint_On_Galaxy</action>
+                <action type="shell_command">unzip SAINTexpress_v3.6.1__2015-05-03.zip</action>
+                <action type="shell_command">./make -j</action>
+                <action type="set_environment">
+                    <environment_variable name="PATH" action="prepend_to">$REPOSITORY_INSTALL_DIR/Saint_On_Galaxy/SAINTexpress_v3.6.1__2015-05-03/bin</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme></readme>
+    </package>
+</tool_dependency>
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