# HG changeset patch
# User bornea
# Date 1447175649 18000
# Node ID 0f016db60195b97229d721d3f5ca78115f164e0e
# Parent  aaf9cfbaee2f02174106b224ba3ef5fc19fb347b
Deleted selected files

diff -r aaf9cfbaee2f -r 0f016db60195 saint_wrapper.xml
--- a/saint_wrapper.xml	Tue Nov 10 12:08:16 2015 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,35 +0,0 @@
-<tool id="saint_wrapper" name="SAINT">
-  <description></description>
-  <command interpreter="python">saint_wrapper.py $inter_input $prey_input $bait_input $rep_num $vc_bool $vc_num $go_bool $go_file $output</command>
-  <inputs>
-    <param format="txt" name="inter_input" type="data" label="Interactions File"/>
-    <param format="txt" name="prey_input" type="data" label="Prey File"/>
-    <param format="txt" name="bait_input" type="data" label="Bait File"/>
-    <param name="rep_num" type="integer" value="100" label="Number of Replicates" help="the number of replicates (with largest spectral counts or intensities) to be used for probability calculation in each bait.  This option is useful when some baits have more replicates than others." />
-    <param type="boolean" name="vc_bool" checked="false" label="Using Virtual Control Purifications by Compression"/>
-    <param name="vc_num" type="integer" value="1" label="Number of Virtual Controls" />
-    <param type="boolean" name="go_bool" checked="false" label="Incorporate External Data Sources" />
-    <param format="txt" name="go_file" type="data" optional="true" label="External Data File" help="SAINT can be run with the known interaction data in hand and it will incorporate the number of observed interactions into the statistics to boost identification probability."/>
-  </inputs>
-  <outputs>
-    <data format="txt" name="output" />
-  </outputs>
-  <requirements>
-    <repuirement type="package">saintexpress</requirement>
-  </requirements>
-  <stdio>
-    <regex match="error"
-	   source="stdout"
-           level="fatal"
-           description="Unknown error"/>
-  </stdio> 
-
-  <tests>
-    <test>
-      <param name="input" value="fa_gc_content_input.fa"/>
-      <output name="out_file1" file="fa_gc_content_output.txt"/>
-    </test>
-  </tests>
-  <help>
-  </help>
-</tool>