Mercurial > repos > brad-chapman > bam_to_bigwig
view bam_to_bigwig/README.txt @ 0:d2c1af657010
Migrated tool version 0.0.1 from old tool shed archive to new tool shed repository
author | brad-chapman |
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date | Tue, 07 Jun 2011 16:25:46 -0400 |
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children | 0ff100a057ef |
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Convert a BAM file into a BigWig coverage file. This can be used directly from Galaxy for display at UCSC. The advantage over standard Wiggle format is that the data is stored in a compressed format and can be retrieved by genome region. This allows you to view regions of arbitrarily large Wiggle file data at UCSC while avoiding the upload costs. The latest version of the bam_to_wiggle.py script is available at: https://github.com/chapmanb/bcbb/blob/master/nextgen/scripts/bam_to_wiggle.py This requires: Python2, version 2.6 or better pysam (http://code.google.com/p/pysam/) wigToBigWig from UCSC (http://hgdownload.cse.ucsc.edu/admin/exe/)