Mercurial > repos > brad-chapman > bam_to_fastq
view bam_to_fastq/bam_to_fastq-readme.txt @ 0:5a9ada9a3191 default tip
Migrated tool version 0.0.1 from old tool shed archive to new tool shed repository
author | brad-chapman |
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date | Tue, 07 Jun 2011 16:27:36 -0400 |
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Use Picard's SamToFastq program to convert BAM files to fastq. This makes it easy to store reads in Galaxy as compressed, accessible BAM files but then allow them to be extracted to feed into programs requiring fastq. Requires: Picard (http://picard.sourceforge.net/) The SamToFastq.jar file needs to be linked from this directory or available in a standard directory like /usr/share/java/picard. pysam (http://code.google.com/p/pysam/)