Mercurial > repos > brenninc > sync_paired_end_reads

changeset 1:622f0b43ce57 draft

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Uploaded
author brenninc
date Mon, 09 May 2016 08:31:12 -0400
parents 79682a423af7
children b4e854fde491
files syncpairs.xml tool_dependencies.xml
diffstat 2 files changed, 5 insertions(+), 5 deletions(-) [+]
line wrap: on
line diff
--- a/syncpairs.xml	Mon May 09 05:15:01 2016 -0400
+++ b/syncpairs.xml	Mon May 09 08:31:12 2016 -0400
@@ -28,10 +28,10 @@
             <output name="reads2_output" file="C75_S29_R2_001_extracted.fastq" ftype="fastq" />
         </test-->
         <test>
-            <param name="reads1" value="read1.fq" ftype="fastq" /> 
-            <param name="reads2" value="read2.fastq" ftype="fastq" /> 
-            <output name="reads1_output" file="read1_extracted.fastq" ftype="fastq" />
-            <output name="reads2_output" file="read2_extracted.fastq" ftype="fastq" />
+            <param name="reads1" value="read1.fq" ftype="fastqsanger" /> 
+            <param name="reads2" value="read2.fastq" ftype="fastqsanger" /> 
+            <output name="reads1_output" file="read1_extracted.fastq" ftype="fastqsanger" />
+            <output name="reads2_output" file="read2_extracted.fastq" ftype="fastqsanger" />
         </test>
     </tests>
     <help>
--- a/tool_dependencies.xml	Mon May 09 05:15:01 2016 -0400
+++ b/tool_dependencies.xml	Mon May 09 08:31:12 2016 -0400
@@ -1,6 +1,6 @@
 <?xml version="1.0"?>
 <tool_dependency>
     <package name="biopython" version="1.66">
-        <repository changeset_revision="8433ee4531ff" name="package_biopython_1_66" owner="biopython" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
+        <repository changeset_revision="c722591ee0aa" name="package_python_2_7_biopython_1_66" owner="ulfschaefer" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
     </package>
 </tool_dependency>