diff umicount.xml @ 0:d1d0ee366702 draft default tip

Uploaded first version

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/umicount.xml	Wed May 11 04:53:30 2016 -0400
@@ -0,0 +1,46 @@
+<tool id="umicount" name="umicount" version="0.1">
+    <description>Runs umicount</description>
+    <stdio>
+        <exit_code range="1:" level="fatal" description="Error" />
+    </stdio>
+    <command interpreter="python">
+        dedup_fingerprint.py -f "${input}" > "${output}"
+    </command>
+    <inputs>
+        <param name="input" format="bed" label="Select Paired BED file" type="data" />
+    </inputs>
+    <outputs>
+        <data format="bed" name="output" label="Unicount output for ${on_string}" />
+    </outputs>
+    <tests>
+        <test>
+            <param ftype="bed" name="input" value="paired.bed" />
+            <output file="cagescan_fragments.bed" ftype="bed" name="output" />
+        </test>
+    </tests>
+    <help>
+<![CDATA[
+Runs umicount (https://raw.githubusercontent.com/mmendez12/umicount)
+
+See http://umicount.readthedocs.org/en/latest/introduction.html for more details.
+]]>
+    </help>
+    <citations>
+        <citation type="bibtex">
+            @misc{
+                umicount_bibtex,
+                author = {Mickaël Mendez},
+                title = {umicount on GitHub},
+                url = {https://github.com/mmendez12/umicount}
+            }
+        </citation>
+        <citation type="bibtex">
+            @misc{
+                umicount_docs,
+                author = {Mickaël Mendez},
+                title = {umicount documentation on readthedocs},
+                url = {http://umicount.readthedocs.org}
+            }
+        </citation>
+    </citations>
+</tool>