# HG changeset patch # User brenninc # Date 1462773955 14400 # Node ID 36d8076017ee2b8287b5c941a6a2d39f51927237 # Parent 055b2bab9af074febd16769533e392512c0d7c1c Deleted selected files diff -r 055b2bab9af0 -r 36d8076017ee test-data/sample1.ps --- a/test-data/sample1.ps Mon May 09 02:05:34 2016 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,284 +0,0 @@ -%!PS-Adobe-3.0 EPSF-3.0 -%%DocumentNeededResources: font Helvetica -%%+ font Helvetica-Bold -%%+ font Helvetica-Oblique -%%+ font Helvetica-BoldOblique -%%+ font Symbol -%%Title: R Graphics Output -%%Creator: R Software -%%Pages: (atend) -%%BoundingBox: 0 0 720 720 -%%EndComments -%%BeginProlog -/bp { gs sRGB gs } def -% begin .ps.prolog -/gs { gsave } bind def -/gr { grestore } bind def -/ep { showpage gr gr } bind def -/m { moveto } bind def -/l { rlineto } bind def -/np { newpath } bind def -/cp { closepath } bind def -/f { fill } bind def -/o { stroke } bind def -/c { newpath 0 360 arc } bind def -/r { 4 2 roll moveto 1 copy 3 -1 roll exch 0 exch rlineto 0 rlineto -1 mul 0 exch rlineto closepath } bind def -/p1 { stroke } bind def -/p2 { gsave bg fill grestore newpath } bind def -/p3 { gsave bg fill grestore stroke } bind def -/p6 { gsave bg eofill grestore newpath } bind def -/p7 { gsave bg eofill grestore stroke } bind def -/t { 5 -2 roll moveto gsave rotate - 1 index stringwidth pop - mul neg 0 rmoveto show grestore } bind def -/ta { 4 -2 roll moveto gsave rotate show } bind def -/tb { 2 -1 roll 0 rmoveto show } bind def -/cl { grestore gsave newpath 3 index 3 index moveto 1 index - 4 -1 roll lineto exch 1 index lineto lineto - closepath clip newpath } bind def -/rgb { setrgbcolor } bind def -/s { scalefont setfont } bind def -% end .ps.prolog -/sRGB { [ /CIEBasedABC - << /DecodeLMN - [ { dup 0.03928 le - {12.92321 div} - {0.055 add 1.055 div 2.4 exp } - ifelse - } bind dup dup - ] - /MatrixLMN [0.412457 0.212673 0.019334 - 0.357576 0.715152 0.119192 - 0.180437 0.072175 0.950301] - /WhitePoint 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font Symbol -/Symbol findfont -dup length dict begin - {1 index /FID ne {def} {pop pop} ifelse} forall - currentdict - end -/Font5 exch definefont pop -%%EndProlog -%%Page: 1 1 -bp -59.04 433.44 689.76 660.96 cl -0 0 0 srgb -2.25 setlinewidth -[] 0 setdash -0 setlinecap -1 setlinejoin -10.00 setmiterlimit -np -101.87 476.98 m -155.73 0 l -o -0.75 setlinewidth -[ 2.25 3.75] 0 setdash -1 setlinecap -np -179.73 441.87 m -0 0 l -o -np -179.73 512.09 m -0 0 l -o -0.75 setlinewidth -[] 0 setdash -np -140.80 441.87 m -77.87 0 l -o -np -140.80 512.09 m -77.87 0 l -o -np -101.87 441.87 m -155.73 0 l -0 70.22 l --155.73 0 l -0 -70.22 l -o -2.25 setlinewidth -[] 0 setdash -0 setlinecap -np -296.53 652.53 m -155.74 0 l -o -0.75 setlinewidth -[ 2.25 3.75] 0 setdash -1 setlinecap -np -374.40 652.53 m -0 0 l -o -np -374.40 652.53 m -0 0 l -o -0.75 setlinewidth -[] 0 setdash -np -335.47 652.53 m -77.86 0 l -o -np -335.47 652.53 m -77.86 0 l -o -np -296.53 652.53 m -155.74 0 l -0 0 l --155.74 0 l -0 0 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-59.04 652.53 m --7.20 0 l -o -44.64 439.35 (2.0) 1 0 t -44.64 474.46 (2.5) 1 0 t -44.64 509.58 (3.0) 1 0 t -44.64 544.69 (3.5) 1 0 t -44.64 579.80 (4.0) 1 0 t -44.64 614.91 (4.5) 1 0 t -44.64 650.02 (5.0) 1 0 t -np -59.04 433.44 m -630.72 0 l -0 227.52 l --630.72 0 l -0 -227.52 l -o -ep -%%Trailer -%%Pages: 1 -%%EOF diff -r 055b2bab9af0 -r 36d8076017ee test-data/sample1.sam --- a/test-data/sample1.sam Mon May 09 02:05:34 2016 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,14 +0,0 @@ -@SQ SN:ref LN:45 -@SQ SN:ref2 LN:40 -r001 163 ref 7 30 8M4I4M1D3M = 37 39 TTAGATAAAGAGGATACTG * XX:B:S,12561,2,20,112 -r002 0 ref 9 30 1S2I6M1P1I1P1I4M2I * 0 0 AAAAGATAAGGGATAAA * -r003 0 ref 9 30 5H6M * 0 0 AGCTAA * -r004 0 ref 16 30 6M14N1I5M * 0 0 ATAGCTCTCAGC * -r003 16 ref 29 30 6H5M * 0 0 TAGGC * -r001 83 ref 37 30 9M = 7 -39 CAGCGCCAT * -x1 0 ref2 1 30 20M * 0 0 aggttttataaaacaaataa ???????????????????? -x2 0 ref2 2 30 21M * 0 0 ggttttataaaacaaataatt ????????????????????? -x3 0 ref2 6 30 9M4I13M * 0 0 ttataaaacAAATaattaagtctaca ?????????????????????????? -x4 0 ref2 10 30 25M * 0 0 CaaaTaattaagtctacagagcaac ????????????????????????? -x5 0 ref2 12 30 24M * 0 0 aaTaattaagtctacagagcaact ???????????????????????? -x6 0 ref2 14 30 23M * 0 0 Taattaagtctacagagcaacta ??????????????????????? diff -r 055b2bab9af0 -r 36d8076017ee test-data/sample1.tabular --- a/test-data/sample1.tabular Mon May 09 02:05:34 2016 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,7 +0,0 @@ -An_unimportant_column the_x_axis the_y_axis stuff the_value_column more_more_fluff -13 asas alpha foo 23 2 999 -14 dad alpha bar 21 3 23 -15 sd beta foo 21 999 34 -16 wwd gamma foo 34 3 999 -17 sd gamma bar 32 5 23 -18 sdee beta bar 323 5 23 diff -r 055b2bab9af0 -r 36d8076017ee test-data/sample1.text --- a/test-data/sample1.text Mon May 09 02:05:34 2016 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,1 +0,0 @@ -text1 diff -r 055b2bab9af0 -r 36d8076017ee test-data/sample1.tiff Binary file test-data/sample1.tiff has changed diff -r 055b2bab9af0 -r 36d8076017ee test-data/sample1.tsv --- a/test-data/sample1.tsv Mon May 09 02:05:34 2016 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,7 +0,0 @@ -An_unimportant_column the_x_axis the_y_axis stuff the_value_column more_more_fluff -13 asas alpha foo 23 2 999 -14 dad alpha bar 21 3 23 -15 sd beta foo 21 999 34 -16 wwd gamma foo 34 3 999 -17 sd gamma bar 32 5 23 -18 sdee beta bar 323 5 23 diff -r 055b2bab9af0 -r 36d8076017ee test-data/sample1.txt --- a/test-data/sample1.txt Mon May 09 02:05:34 2016 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,1 +0,0 @@ -1 diff -r 055b2bab9af0 -r 36d8076017ee test-data/sample1.xls Binary file test-data/sample1.xls has changed