Mercurial > repos > brigidar > sed_fasta

<tool id="cat_list" name="remove leading characters in fasta downloaded from ncbi to match genbank locus tag">
    <description>tail-to-head</description>
    <command>
        cat $input1 | sed 's/gi.*gb\|//g' | sed 's/\|//g' >> $out_file1    </command>
    <inputs>
        <param name="input1" type="data" label="remove gi to gb characters" multiple="true" />
    </inputs>
    <outputs>
        <data name="out_file1" format="input" metadata_source="input1"/>
    </outputs>
    <tests>
    </tests>
    <help>
    </help>
</tool>
author	brigidar
date	Tue, 06 Oct 2015 12:53:24 -0400
parents
children	04871c6242d2