view select_product.xml @ 7:7d71f20d949e draft

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<tool id="select_product" name="select_product" version="0.6">
    <description>define product names to sort on and flanking region</description>
    <requirements> </requirements>
    <stdio>
        <exit_code range="1:" />
    </stdio>
    
    <command interpreter="python">
        select_product.py -g $input_file -n $number -k $keys_1 -o $output_file
    </command>

    <inputs>
        <param format="genbank" name="input_file" type="data" label="reference genbank file"/>
        <param name="number" type="integer" value="50" label="flanking region"/>
        <param name="keys_1" type="text" value="transposase" label="list of keys separated by comma of product names"/>
    </inputs>


    <outputs>
        <data format="tabular" name="output_file">
        </data>

        
    </outputs>
    
    <tests>
    <!-- Empty -->
    </tests>

    <help>
        
.. class:: infomark

**What it does**


Finds all CDS that match the key words provided in the comma separated argument -k in the product description adds a given number of bases on each side of the transcript for the exclusion set


-------------

.. class:: infomark

**Tool Author**

Brigida Rusconi


    </help>
</tool>