# HG changeset patch # User brigidar # Date 1447098981 18000 # Node ID c5195904b225f73f43419513d93fd2d573f4b3e1 # Parent 9c02f5e8e6574c20015c38165366aeffcf3282b9 changed output to bed format diff -r 9c02f5e8e657 -r c5195904b225 snp_to_bed.xml --- a/snp_to_bed.xml Wed Oct 07 15:17:51 2015 -0400 +++ b/snp_to_bed.xml Mon Nov 09 14:56:21 2015 -0500 @@ -1,12 +1,12 @@ - - removes unwanted column + + convert SNP to interval cat $input1 | sed '1d'| awk -F "\t" -v OFS="\t" '{print $1, $2-1, $2}'>> $out_file1 - +